makeElementReplicationTiming: Make replication timing signal value for each regulatory...

In mil2041/CNCDriver: CNCDriver

Description

Make replication timing signal value for each regulatory element

Usage

makeElementReplicationTiming(replicationTimingDF, elementDF, useCores = 1)

Arguments

replicationTimingDF	replicationTimingDF data frame
elementDF	regulatory element data frame
useCores	Default is one, number of cpu to use

Value

elementsRTdf data frame

Examples

#date<-getRunDates(latest=TRUE)
cancerType<-"KIRC"
selectedSampleId<-NA
#worDir<-getwd()
mutSig2CVthreshold<-0.1
rareMutationUpperLimit<-0.3
rareMutationLowerLimit<-0.1
rareMutationFreq<-0.02

#runNetBox2(dataDir,cancerType,
#           mutationList,ampGeneList,delGeneList,epiSilencedList,
#           mutationFreq,ampGeneFreq,delGeneFreq,epiSilencedFreq,
#           pathwayCommonsDb,directed,
#           linkerPValThreshold,communityDetectionMethod,
#           keepIsolatedNodes,verbose=TRUE)

mil2041/CNCDriver documentation built on Dec. 13, 2020, 3:41 a.m.