addTriNucleotideDistribution: Add trinucleotide distribution annotations

Description Usage Arguments Value Examples

View source: R/somaticSignature-addTriNucleotideDistribution.R

Description

Add trinucleotide distribution annotations

Usage

1

Arguments

dat

reducedFunseqOutput data frame

Value

triNucleotideDat data frame

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
#date<-getRunDates(latest=TRUE)
cancerType<-"KIRC"
selectedSampleId<-NA
#worDir<-getwd()
mutSig2CVthreshold<-0.1
rareMutationUpperLimit<-0.3
rareMutationLowerLimit<-0.1
rareMutationFreq<-0.02

#runNetBox2(dataDir,cancerType,
#           mutationList,ampGeneList,delGeneList,epiSilencedList,
#           mutationFreq,ampGeneFreq,delGeneFreq,epiSilencedFreq,
#           pathwayCommonsDb,directed,
#           linkerPValThreshold,communityDetectionMethod,
#           keepIsolatedNodes,verbose=TRUE)

mil2041/CNCDriver documentation built on Dec. 13, 2020, 3:41 a.m.