DimPlotly3d: DimPlotly3D
In milescsmith/SeuratPlotly: Plotly-based methods for displaying Seurat data

DimPlotly3D

DimPlotly3d(object, grouping_var = "ident", reduction = "umap",
  label = FALSE, label_size = 12, label_color = "000000",
  show_arrow = FALSE, return = FALSE, pt_size = 2,
  pt_shape = "circle", opacity = 1, dim_1 = 1, dim_2 = 2,
  dim_3 = 3, palette = "Set1", plot_height = 900, plot_width = 900,
  plot_title = NULL, pt_info = NULL, legend = TRUE,
  legend_font_size = 12, plot_grid = FALSE, plot_axes = FALSE)

`object`	Seurat object
`grouping_var`	Variable by which to group cells. Currently only works with the current ident and column names from meta.data. Default: ident
`reduction`	Dimensional reduction to display. Default: umap
`label`	Add a label showing thr group name to the graph. Default: FALSE
`label_size`	Label font size. Default: 12
`label_color`	Color for label border and arrow. Need hex value.. Default = '000000'
`show_arrow`	Offset the position of the labels and instead point to each group with an arrow. Default: FALSE
`return`	Return the plot object instead of displaying it. Default: FALSE
`pt_size`	Size of the points in pixels. Default: 2
`pt_shape`	Shape to use for the points. Default: circle
`opacity`	Transparency level to use for the points on a 0-1 scale. Default: 1
`dim_1`	Dimension to display on the x-axis. Default: 1
`dim_2`	Dimension to display on the y-axis. Default: 2
`dim_3`	Dimension to display on the z-axis. Default: 3
`palette`	Color palette to use. Must be a palette available in the Paletteer package. . Default: 'Set1'
`plot_height`	Plot height in pixels. Default: 900
`plot_width`	Plot width in pixels. Default: 900
`plot_title`	Plot title. Default: reduction
`pt_info`	Meta.data columns to add to the hoverinfo popup.. Default: ident
`legend`	Display legend?. Default: TRUE
`legend_font_size`	Legend font size. Default: 12
`plot_grid`	Display the major unit tick marks?. Default: FALSE
`plot_axes`	Display the major x, y, and z axes?. Default: FALSE