PrepDr: PrepDr

In milescsmith/SeuratPlotly: Plotly-based methods for displaying Seurat data

Description

Helper function to extract dimensional reduction data from a Seurat object and format it into a data frame for use in plotting.

Usage

PrepDr(object, ...)

## S3 method for class 'Seurat'
PrepDr(object, reduction, dim_1 = 1, dim_2 = 2,
  dim_3 = NULL, grouping_var = NULL, ...)

Arguments

object	scRNA-seq data object
...	Not used
reduction	dimensional reduction to extract
dim_1	Dimension one. X-axis data.
dim_2	Dimension two. Y-axis data.
dim_3	Dimension three. Z-axis data.
grouping_var	Identity information to use for grouping_var. Permissible values include meta.data column names.

Value

data.frame

milescsmith/SeuratPlotly documentation built on June 5, 2019, 1:16 a.m.