pickSoftThreshold: pickSoftThreshold
In milescsmith/WGCNA: Weighted Correlation Network Analysis

pickSoftThreshold

R Documentation

pickSoftThreshold

Description

The function pickSoftThreshold allows one to estimate the power parameter when using a soft thresholding approach with the use of the power function AF(s)=s^Power. The removeFirst option removes the first point (k=1, P(k=1)) from the regression fit.

Usage

pickSoftThreshold(
  data,
  dataIsExpr = TRUE,
  weights = NULL,
  RsquaredCut = 0.85,
  powerVector = c(seq(1, 10, by = 1), seq(12, 20, by = 2)),
  removeFirst = FALSE,
  nBreaks = 10,
  blockSize = NULL,
  corFnc = cor,
  corOptions = list(use = "p"),
  networkType = "unsigned",
  moreNetworkConcepts = FALSE,
  gcInterval = NULL,
  verbose = 0,
  indent = 0
)

Arguments

`data`
`dataIsExpr`
`weights`
`RsquaredCut`
`powerVector`
`removeFirst`
`nBreaks`
`blockSize`
`corFnc`
`corOptions`
`networkType`
`moreNetworkConcepts`
`gcInterval`
`verbose`
`indent`