API for milescsmith/WGCNA
Weighted Correlation Network Analysis

Global functions
AFcorMI Man page
BD.actualFileNames Man page
BD.blockLengths Man page
BD.checkAndDeleteFiles Man page
BD.getData Man page
BD.getMetaData Man page
BD.nBlocks Man page
BlockInformation Man page
BlockwiseData Man page
BloodLists Man page
BrainLists Man page
BrainRegionMarkers Man page
ConsensusOptions Man page
ConsensusTree Man page
CorrelationOptions Man page
GOenrichmentAnalysis Man page
GTOMdist Man page
ImmunePathwayLists Man page
NetworkOptions Man page
PWLists Man page
SCsLists Man page
TOMdist Man page
TOMplot Man page
TOMsimilarity Man page
TOMsimilarityFromExpr Man page
TrueTrait Man page
WGCNAnThreads Man page
accuracyMeasures Man page
addBlockToBlockwiseData Man page
addErrorBars Man page
addGrid Man page
addGuideLines Man page
addTraitToMEs Man page
adjacency Man page
adjacency.fromSimilarity Man page
adjacency.polyReg Man page
adjacency.splineReg Man page
alignExpr Man page
allocateJobs Man page
allowWGCNAThreads Man page
automaticNetworkScreening Man page
automaticNetworkScreeningGS Man page
bicor Man page
bicorAndPvalue Man page
bicovWeightFactors Man page
bicovWeights Man page
bicovWeightsFromFactors Man page
binarizeCategoricalColumns Man page
binarizeCategoricalColumns.forPlots Man page
binarizeCategoricalColumns.forRegression Man page
binarizeCategoricalColumns.pairwise Man page
binarizeCategoricalVariable Man page
blockSize Man page
blockwiseConsensusModules Man page
blockwiseIndividualTOMs Man page
blockwiseModules Man page
blueWhiteRed Man page
branchEigengeneDissim Man page
branchEigengeneSimilarity Man page
branchSplit Man page
branchSplit.dissim Man page
branchSplitFromStabilityLabels Man page
branchSplitFromStabilityLabels.individualFraction Man page
branchSplitFromStabilityLabels.prediction Man page
checkAdjMat Man page
checkSets Man page
checkSimilarity Man page
chooseOneHubInEachModule Man page
chooseTopHubInEachModule Man page
clusterCoef Man page
coClustering Man page
coClustering.permutationTest Man page
colQuantileC Man page
collapseRows Man page
collapseRowsUsingKME Man page
collectGarbage Man page
conformityBasedNetworkConcepts Man page
conformityDecomposition Man page
consensusCalculation Man page
consensusDissTOMandTree Man page
consensusKME Man page
consensusMEDissimilarity Man page
consensusOrderMEs Man page
consensusProjectiveKMeans Man page
consensusRepresentatives Man page
consensusTOM Man page
consensusTreeInputs Man page
convertNumericColumnsToNumeric Man page
cor Man page
cor1 Man page
corAndPvalue Man page
corFast Man page
corPredictionSuccess Man page
corPvalueFisher Man page
corPvalueStudent Man page
correlationPreservation Man page
coxRegressionResiduals Man page
cutreeStatic Man page
cutreeStaticColor Man page
disableWGCNAThreads Man page
displayColors Man page
dynamicMergeCut Man page
empiricalBayesLM Man page
enableWGCNAThreads Man page
exportNetworkToCytoscape Man page
exportNetworkToVisANT Man page
factorizeNonNumericColumns Man page
fixDataStructure Man page
formatLabels Man page
fundamentalNetworkConcepts Man page
goodGenes Man page
goodGenesMS Man page
goodSamples Man page
goodSamplesGenes Man page
goodSamplesGenesMS Man page
goodSamplesMS Man page
greenBlackRed Man page
greenWhiteRed Man page
hierarchicalBranchEigengeneDissim Man page
hierarchicalConsensusCalculation Man page
hierarchicalConsensusKME Man page
hierarchicalConsensusMEDissimilarity Man page
hierarchicalConsensusModules Man page
hierarchicalConsensusTOM Man page
hierarchicalMergeCloseModules Man page
hubGeneSignificance Man page
imputeByModule Man page
individualTOMs Man page
initProgInd Man page
intramodularConnectivity Man page
intramodularConnectivity.fromExpr Man page
isMultiData Man page
kMEcomparisonScatterplot Man page
keepCommonProbes Man page
labelPoints Man page
labeledBarplot Man page
labeledHeatmap Man page
labeledHeatmap.multiPage Man page
labels2colors Man page
list2multiData Man page
lowerTri2matrix Man page
matchLabels Man page
matrixToNetwork Man page
mergeBlockwiseData Man page
mergeCloseModules Man page
metaAnalysis Man page
metaZfunction Man page
minWhichMin Man page
moduleColor.getMEprefix Man page
moduleEigengenes Man page
moduleMergeUsingKME Man page
moduleNumber Man page
modulePreservation Man page
mtd.apply Man page
mtd.applyToSubset Man page
mtd.branchEigengeneDissim Man page
mtd.colnames Man page
mtd.mapply Man page
mtd.rbindSelf Man page
mtd.setAttr Man page
mtd.setColnames Man page
mtd.simplify Man page
mtd.subset Man page
multiData Man page
multiData.eigengeneSignificance Man page
multiData2list Man page
multiGSub Man page
multiGrep Man page
multiGrepl Man page
multiIntersect Man page
multiSetMEs Man page
multiSub Man page
multiUnion Man page
mutualInfoAdjacency Man page
nPresent Man page
nSets Man page
nearestCentroidPredictor Man page
nearestNeighborConnectivity Man page
nearestNeighborConnectivityMS Man page
networkConcepts Man page
networkScreening Man page
networkScreeningGS Man page
newBlockInformation Man page
newBlockwiseData Man page
newConsensusOptions Man page
newConsensusTree Man page
newCorrelationOptions Man page
newNetworkOptions Man page
normalizeLabels Man page
numbers2colors Man page
orderBranchesUsingHubGenes Man page
orderMEs Man page
orderMEsByHierarchicalConsensus Man page
overlapTable Man page
overlapTableUsingKME Man page
pickHardThreshold Man page
pickHardThreshold.fromSimilarity Man page
pickSoftThreshold Man page
pickSoftThreshold.fromSimilarity Man page
plotClusterTreeSamples Man page
plotColorUnderTree Man page
plotCor Man page
plotDendroAndColors Man page
plotEigengeneNetworks Man page
plotMEpairs Man page
plotMat Man page
plotModuleSignificance Man page
plotMultiHist Man page
plotNetworkHeatmap Man page
plotOrderedColors Man page
pmean Man page
pmean.fromList Man page
pmedian Man page
pminWhich.fromList Man page
populationMeansInAdmixture Man page
pquantile Man page
pquantile.fromList Man page
prepComma Man page
prependZeros Man page
preservationNetworkConnectivity Man page
projectiveKMeans Man page
propVarExplained Man page
proportionsInAdmixture Man page
pruneAndMergeConsensusModules Man page
pruneConsensusModules Man page
qvalue Man page
qvalue.restricted Man page
randIndex Man page
rankPvalue Man page
recutBlockwiseTrees Man page
recutConsensusTrees Man page
redWhiteGreen Man page
reflectBranch Man page
relativeCorPredictionSuccess Man page
removeGreyME Man page
removePrincipalComponents Man page
replaceMissing Man page
returnGeneSetsAsList Man page
rgcolors.func Man page
rowQuantileC Man page
sampledBlockwiseModules Man page
sampledHierarchicalConsensusModules Man page
scaleFreeFitIndex Man page
scaleFreePlot Man page
selectBranch Man page
selectFewestConsensusMissing Man page
setCorrelationPreservation Man page
shortenStrings Man page
sigmoidAdjacencyFunction Man page
signedKME Man page
signifNumeric Man page
signumAdjacencyFunction Man page
simpleConsensusCalculation Man page
simpleHierarchicalConsensusCalculation Man page
simulateDatExpr Man page
simulateDatExpr5Modules Man page
simulateEigengeneNetwork Man page
simulateModule Man page
simulateMultiExpr Man page
simulateSmallLayer Man page
sizeGrWindow Man page
softConnectivity Man page
softConnectivity.fromSimilarity Man page
spaste Man page
standardColors Man page
standardScreeningBinaryTrait Man page
standardScreeningCensoredTime Man page
standardScreeningNumericTrait Man page
stdErr Man page
stratifiedBarplot Man page
subsetTOM Man page
swapTwoBranches Man page
transposeBigData Man page
unsignedAdjacency Man page
updateProgInd Man page
userListEnrichment Man page
vectorTOM Man page
vectorizeMatrix Man page
verboseBarplot Man page
verboseBoxplot Man page
verboseIplot Man page
verboseScatterplot Man page
votingLinearPredictor Man page
milescsmith/WGCNA documentation built on May 4, 2019, 12:56 a.m.