col_pop: Count the number of colonised patients

In mirjamlaager/mrsamcmc: An Implementation of Data Augmented MCMC for Inference on MRSA Transmission

Description

This function counts the number of colonised patients on and off antibiotics on a given day.

Usage

col_pop(admissions, colonisations, discharges, statuses, day, antibiotics)

Arguments

admissions	a vector with days of admission of the patients.
discharges	a vector with days of discharge of the patients.
statuses	a vector the statuses on discharge of the patients
day	the day for which the colonised number of colonised patients is counted.
antibiotics	a matrix where each row corresponds to a patient and the entries correspond to a day when antibiotics were administered.
colonsiations	a vector with days of colonisation of the patients.

mirjamlaager/mrsamcmc documentation built on May 20, 2020, 11:13 a.m.