count_tests_forward_simulations: Count positive and negative tests

In mirjamlaager/mrsamcmc: An Implementation of Data Augmented MCMC for Inference on MRSA Transmission

Description

This function counts the positive and negative tests in the simulated data generated by run_forward_simulations().

Usage

count_tests_forward_simulations(rho_1, rho_2, colonisations, antibiotics,
  days_of_tests, n_patients)

Arguments

rho_1	the test sensitivity in the absence of antibiotics.
rho_2	the test sensitivity in the presence of antibiotics.
colonisations	a vector of colonisation times of the patients.
antibiotics	a matrix where each row corresponds to a patient and the entries correspond to a day when antibiotics were administered.
days_of_tests	a matrix where each row corresponds to a patient and the entries correspond to a day when a test was conducted.
n_patients	the total number of patients.

Value

This function returns a vector with two elements. The first number is the total number of positive tests, the second number is the total number of negative tests.

mirjamlaager/mrsamcmc documentation built on May 20, 2020, 11:13 a.m.