log_lik_sources: Log likelihood of sources

In mirjamlaager/mrsamcmc: An Implementation of Data Augmented MCMC for Inference on MRSA Transmission

Description

This function calculates the source component of the overall log likelihood.

Usage

log_lik_sources(nPatients, nTypes, admission, colonisation, source,
  discharge, status, antibiotics, b)

Arguments

nPatients	the total number of patients.
nTypes	the number of differnt types of colonisations.
admission	a vector with days of admission of the patients.
colonisation	a vector with days of colonisation of the patients.
source	a vector with the sources of the patients.
discharge	a vector with days of discharge of the patients.
status	a vector with the statuses on discharge of the patients.
antibiotics	a matrix where each row corresponds to a patient and the entries correspond to a day when antibiotics were administered.
b	the multiplicative effect of antibiotics on transmissibility.

mirjamlaager/mrsamcmc documentation built on May 20, 2020, 11:13 a.m.