ionml.convert.qtegracsv2ioncsv: Convert LAICPQMS-type QTEGRACSV by Analyte G2 with iCAP-Q to...
In misasa/chelyabinsk: Express geochemical datasets

Description Usage Arguments Value See Also Examples

View source: R/ionml.convert.qtegracsv2ioncsv.R

Convert LAICPQMS-type QTEGRACSV by Analyte G2 with iCAP-Q to IONCSV. Filter metadata out and append column of cycle number.

This program assumes extensions of LAICPQMS-type QTEGRACSV and IONCSV to be ‘.csv’ and ‘.ion’, respectively.

The IONCSV consists of columns of time and ion intensities. The first column of each line should be number of ‘cycle’. Colname of the IONCSV should be ‘time’ and name of element followed by atomic weight (‘Si29’ instead of ‘29Si’).

1	ionml.convert.qtegracsv2ioncsv(acqfile, outfile = NULL, force = FALSE)

`acqfile`	Name of LAICPQMS-type QTEGRACSV exported form Qtegra
`outfile`	Name of IONCSV that will be created
`force`	Flag to force convert again

Name of IONCSV that was created

ionml-laicpqms.plx

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acqfile <- cbk.path("ref_cpx_klb1@1.csv")
message(sprintf("The acqfile is located at |%s|.",acqfile))
ionml.convert.qtegracsv2ioncsv(acqfile,outfile=tempfile(fileext=".ion"))