createAnnotation: Creation of annotation files

In mitterecker/cn.farms: cn.FARMS - factor analysis for copy number estimation

Description

Annotation files for cn.farms are created

Usage

createAnnotation(filenames = NULL, annotation = NULL, annotDir = NULL,
  checks = TRUE)

Arguments

filenames	An absolute path of the CEL files to process.
annotation	Optional parameter stating the annotation from a pd-mapping.
annotDir	Optional parameter stating where the annotation should go.
checks	States if sanity checks should be done.

Value

NULL

Note

The annotation files used for cn.farms will be placed in the current work directory under annotations.

Author(s)

Djork-Arne Clevert [e-mail] and Andreas Mitterecker [e-mail]

Examples

## Not run: 
library("hapmapsnp6")
celDir <- system.file("celFiles", package = "hapmapsnp6")
filenames <- dir(path = celDir, full.names = TRUE)
createAnnotation(filenames = filenames)

## End(Not run)

mitterecker/cn.farms documentation built on March 10, 2020, 10:19 a.m.