normalizeSor: Runs the SOR normalization on microarray data

In mitterecker/cn.farms: cn.FARMS - factor analysis for copy number estimation

Description

Runs the SOR normalization on microarray data

Usage

normalizeSor(filenames, cores = 1, annotDir = NULL, alleles = FALSE,
  runtype = "ff", cyc = 5, pkgname = NULL, saveFile = "Sor")

Arguments

filenames	an absolute path of the CEL files
cores	cores
annotDir	annotDir
alleles	alleles
cyc	states the number of cycles for the EM algorithm.
runtype	Mode how the results are saved. Possible values are ff or bm. If ff is chosen the data will not be saved automatically. With bm the results will be saved permanently.
pkgname	Optional parameter for the CEL mapping.
saveFile	Name of the file to save.

Value

An instance of ExpressionSet

Author(s)

Djork-Arne Clevert [e-mail] and Andreas Mitterecker [e-mail]

mitterecker/cn.farms documentation built on March 10, 2020, 10:19 a.m.