getFreqShrink: Calculate cell frequencies for shrinakge estimator

In mjcasy/infohet: Information in Heterogeneity

Description

Calculate cell frequencies for shrinakge estimator

Usage

getFreqShrink(transposeCounts, ind, N, Total)

Arguments

transposeCounts	Transposed sparse count matrix
ind	Integer indicating chosen gene (row number in count matrix)
N	Number of cells
Total	Integer of total counts per cell

Value

Numeric vector of shrinkage cell frequencies

Examples

Counts <- Matrix::sparseMatrix(i = c(2,3,3),
                               j = c(1,1,2),
                               x = c(1,1,1))
N <- ncol(Counts)
Total <- Matrix::rowSums(Counts)
getFreqShrink(Matrix::t(Counts), 1, N, Total)

mjcasy/infohet documentation built on May 4, 2021, 1:09 a.m.