getHetMacro: Calaculate Information in Model

In mjcasy/infohet: Information in Heterogeneity

Description

Calculates HetMacro, the heterogeneity explained by a given model of population structure, in a gene-wise manner

Usage

getHetMacro(CountsMatrix, Groups, base = 2)

Arguments

CountsMatrix	Feature x cell sparse counts matrix of class dgCMatrix
Groups	Factor of cell identities
base	base of log

Value

Numeric vector of gene-wise HetMacro

Examples

Counts <- Matrix::sparseMatrix(i = c(1,1,1,1,2,2,2),
                               j = c(1,2,3,4,1,2,3),
                               x = c(2,2,2,2,3,3,2))
Ident <- factor(c("1", "1", "2", "2"))
getHetMacro(Counts, Ident)

mjcasy/infohet documentation built on May 4, 2021, 1:09 a.m.