calc_PCAs | Run PCA on gene expression count data |
calc_PCcors | Calculate correlations of principal components with quality... |
convert_gene_names | Convert gene identifiers |
estimate_saturation | Estimate saturation of genes based on rarefaction of reads |
get_HGNC | Convert gene identifiers to HGNC gene symbols |
logXYratio | Calculate ratio of total counts of genes mapping to the X and... |
plot_metrics | Plot RNAseq metrics |
plot_PCAs | Plot samples on pairwise sets of PCA axes, optionally... |
plot_PCcor_heatmap | Plot a heatmap of correlations between PCs and other sample... |
plot_PC_loadings | Plot PC loadings |
plot_read_counts | Plot read counts by library |
plot_saturation_curve | Plot saturation curves of genes based on reads object |
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