findLabeledPeaks: findLabeledPeaks

findLabeledPeaksR Documentation

findLabeledPeaks

Description

find labeled peaks in a data.frame that was prepared by mergecollectlist()

Usage

findLabeledPeaks(
  df,
  ref_intensityCols,
  comp_intensityCols,
  ifoldS1 = 10,
  ifoldS2 = 5
)

Arguments

df

data.frame as returned by mergecollectlist(); importantly with IXSX prefixes, including for the intensity columns

ref_intensityCols

intensity column names from original feature table (without IXS1. prefix) e.g. for unlabeled samples

comp_intensityCols

intensity column names from original feature table (without IXS2. prefix) e.g. for labeled samples

ifoldS1

min. fold Iso1/Iso2 in unlabeled

ifoldS2

max. fold Iso1/Iso2 in labeled


mjhelf/Metaboseek documentation built on April 23, 2022, 12:09 p.m.