brainmorph | Generate a brain morph plot *(W)* |
choice | Alignment choice game to align internal reference planes... |
clean_duplicates | Duplicate cell cleanup *(W)* |
dot-onAttach | On attachment of SMART |
filter_loop | Loop through reference slices |
forward_warp | Forward warp back to atlas space |
get_rois | Get ROI data from a mapped wholebrain dataset. |
get_savepaths | Automatically generates savepaths and save directories. |
get_sunburst | Generate a sunburst plot using a forward warped dataset. |
get_table | Create a data frame of left/right counts and their ratio of... |
get_tree | Create a dataframe of hierarchical region cell count data. |
glassbrain2 | Modified glassbrain function |
im_sort | A function to sort image paths for large imaging datasets |
interpolate | Interpolate all AP and z numbers for atlas plates in a whole... |
platereturn | Helper background functions |
pull_atlas | Pull up atlas plate in graphics device. |
regi_loop | Automatically loops through the image registration process |
registration2 | Console user interface built on top of 'registration()'... |
seg_loop | Loop through and segment images in the segmentation channel |
setup_pl | User friendly way to setup whole brain pipeline analysis |
SMART | SMART (Semi-manual alignment to reference template): a... |
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