choice: Alignment choice game to align internal reference planes...

Description Usage Arguments Value

View source: R/choice.R

Description

User friendly way to play the wholebrain choice game to align internal reference atlas plates. Automatically saves images of chosen aligned images in the folder specified by setup$savepaths$out_reference_aligned. For use with mapping whole brain only.

Usage

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choice(setup, touchup = NA, midpoint = FALSE, filetype = c("tif"),
  xpos = c(200, 760, 1350), brightness = 70, font_col = "white",
  font_size = 80, font_location = "+100+30", gravity = "southwest",
  choice_step = c(200, 100, 30, 10), atlas = TRUE, at_pos = 0)

Arguments

setup

(required) Setup list from setup_pl().

touchup

(default = NA) Enter a vector of reference AP coordinates. The choice game will replay for just those points. Note: Numbers entered will be rounded to the nearest atlas plates. No need to enter exact atlas AP numbers.

midpoint

(default = FALSE) Play the midpoint game following choice the choice game.

filetype

(optional, default = "tif") Image format to save. Setting this argument as a vector of image formats, e.g. c("tif", "png") will save both image types. Options: common image formats like "tiff", "png", "jpeg", "gif", "rgb" or "rgba". See magick package documentation for more info on the image_write() function

xpos

(optional, default = c(200, 760, 1350)) A vector of x-positions in pixels justified to the left of the main computer screen for the three choice windows.

brightness

(optional, default = 70) Popup image brightness.

font_col

(optional, default = "white") Image annotation font color.

font_size

(optional, default = 80) Image annotation font size.

font_location

(optional, default = "+100+30") Text position from center of gravity parameter in pixels

choice_step

(optional, default= c(200,100,30,10)) Determines the successive "zoom" of images picked on either side of the center image.

atlas

(optional, default = TRUE) Will automatically pull the atlas image up during the choice game.

Value

The argument assigned to setup is returned with aligned internal z numbers matching internal AP coordinates.


mjin1812/SMART documentation built on Aug. 8, 2019, 12:31 p.m.