Description Usage Arguments Value
User friendly way to play the wholebrain choice game to align internal reference atlas plates. Automatically saves images of chosen aligned images in the folder specified by setup$savepaths$out_reference_aligned. For use with mapping whole brain only.
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setup |
(required) Setup list from |
touchup |
(default = NA) Enter a vector of reference AP coordinates. The choice game will replay for just those points. Note: Numbers entered will be rounded to the nearest atlas plates. No need to enter exact atlas AP numbers. |
midpoint |
(default = FALSE) Play the midpoint game following choice the choice game. |
filetype |
(optional, default = "tif") Image format to save. Setting
this argument as a vector of image formats, e.g. c("tif", "png") will save
both image types. Options: common image formats like "tiff", "png", "jpeg",
"gif", "rgb" or "rgba". See magick package documentation for more info on
the |
xpos |
(optional, default = c(200, 760, 1350)) A vector of x-positions in pixels justified to the left of the main computer screen for the three choice windows. |
brightness |
(optional, default = 70) Popup image brightness. |
font_col |
(optional, default = "white") Image annotation font color. |
font_size |
(optional, default = 80) Image annotation font size. |
font_location |
(optional, default = "+100+30") Text position from center of gravity parameter in pixels |
choice_step |
(optional, default= c(200,100,30,10)) Determines the successive "zoom" of images picked on either side of the center image. |
atlas |
(optional, default = TRUE) Will automatically pull the atlas image up during the choice game. |
The argument assigned to setup is returned with aligned internal z numbers matching internal AP coordinates.
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