im_sort: A function to sort image paths for large imaging datasets
In mjin1812/SMART: SMART (Semi-manual alignment to reference template): a pipeline for whole brain mapping projects
Description
Usage
Arguments
Details
Value
Description
User friendly way to sort images from the registration channel.
Asks for user input to account for flexible naming conventions for images.
Usage
1
Arguments
setup
(required) Argument used to access registration and segmentation
folders.
extension
(optional, default = "tif") File extension of the imaging
data.
separator
(optional, default = "_") Separator character to parse
filename.
position
(optional) Position of z number in filename. If this argument
is called, the user input is skipped.
Details
Compared to the list.files() function, this function will sort 100+
files in their appropriate order by z plane.
Value
setup is returned with setup$image_paths filled as a list of
sorted paths. The first element is a sorted character vector of
registration channel paths. The second element is a sorted character vector
of segmentation channel paths.
mjin1812/SMART documentation built on Oct. 30, 2021, 7:25 p.m.
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Description Usage Arguments Details Value
Description
User friendly way to sort images from the registration channel. Asks for user input to account for flexible naming conventions for images.
Usage
1 |
Arguments
setup |
(required) Argument used to access registration and segmentation folders. |
extension |
(optional, default = "tif") File extension of the imaging data. |
separator |
(optional, default = "_") Separator character to parse filename. |
position |
(optional) Position of z number in filename. If this argument is called, the user input is skipped. |
Details
Compared to the list.files() function, this function will sort 100+
files in their appropriate order by z plane.
Value
setup is returned with setup$image_paths filled as a list of sorted paths. The first element is a sorted character vector of registration channel paths. The second element is a sorted character vector of segmentation channel paths.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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