Man pages for mjwestgate/sppairs
Species Pairwise Association Analysis (SPAA)
| binary.entropy | Binary entropy of proportions data |
| clean.dataset | Convert a dataset to binary, and remove unusually rare or... |
| fisher.test.pval | Calculate the significance of the association between two... |
| glmer.coef | Calculate pairwise association between species using mixed... |
| make.binary | Convert a matrix or data.frame to binary |
| make.long.format | Convert a matrix of pairwise associations into a 3-column... |
| make.wide.format | Convert a 3-column data.frame into a matrix |
| mutual.information | Calculate the association between two vectors using mutual... |
| or.asymmetric | Asymmetric odds ratio calculation using a contingency table |
| or.glm | Odds ratio calculation using regression |
| or.glmer | Odds ratio calculation using mixed models |
| or.symmetric | Symmetric odds ratio calculation using a contingency table |
| plot.spaa | Network diagram of species pairwise associations |
| prop.occupied | Proportion of occupied sites |
| spaa | Species pairwise association analysis |
| sppairs | An R package for pairwise association analysis |
