clean.dataset: Convert a dataset to binary, and remove unusually rare or...

In mjwestgate/sppairs: Species Pairwise Association Analysis (SPAA)

Description

Converts a dataset to binary format and removes rare and/or common species.

Usage

clean.dataset(x, make.binary=TRUE, cutoff.min=0.1, cutoff.max=1, ...)

Arguments

x	A data.frame or matrix
make.binary	Should the dataset be converted to binary? Defaults to TRUE
cutoff.min	Minimum proportion of occupied rows for a species to be retained in the dataset.
cutoff.max	Maximum proportion of occupied rows for a species to be retained in the dataset.
...	Further information to pass to make.binary (i.e. to set a threshold)

Value

Expansion to make.binary, that removes very rare and/or very common species from the dataset.

See Also

cut

mjwestgate/sppairs documentation built on May 23, 2019, 1:05 a.m.