View source: R/plot_significant_peptides.R
peptide_pv_tp | R Documentation |
Returns plot where significant peptides are colored in blue-red scheme.
peptide_pv_tp(
df,
pv,
sd,
nb_row,
ranges = c(-Inf, seq(-30, 30, by = 10), Inf),
pv_cutoff = 0.01,
replicates = 3
)
df |
average data frame. Generated using ave_timepoint() function. |
pv |
pvalues dataframes calculated using pv_timepoint() function |
sd |
standard deviation data.frame generated using sd_timepoint function |
nb_row |
number of peptides in each row. Plotting parameter. |
ranges |
ranges for coloring scheme. Default set to c(-Inf, seq(-30, 30, by=10), Inf) |
pv_cutoff |
p-value cutoff here set up to 0.01 |
replicates |
number of replicates in sample. Default set to 3. |
plot with peptides which are significantly different between sets.
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