pv_timepoint: Calculation of pvalue between first protein state and any...

In mkajano/HDXBoxeR: Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data

Calculation of pvalue between first protein state and any other state from all_states file

Description

Compares means of sets of uptake data and return dataframe with pvalues. Welch t.test is used for analysis. Sets are compared to the first state in the input file. If other order of the sets is required use Default for the number of replicates is 3.

Usage

pv_timepoint(df, replicates = 3)

Arguments

df	output from functions output_tp or output_tp_proc.
replicates	number of replicates used. Default is set to replicates=3

Value

Data.frame with p-values

Examples

file_nm<-system.file("extdata", "All_results_table.csv", package = "HDXBoxeR")
a<- output_tp(file_nm)
pv<-pv_timepoint(df=a) ##if number of replicates is equal 3
# pv1<-pv_timepoint(df=a, replicates=4) ##if number of replicates is equal 4
#b<-output_tp_states(file_nm, states=c("State4", "State2", "State3" ))
#pv_states<-pv_timepoint(df=b) ### here means of State4, will be compared to State2 and State4

mkajano/HDXBoxeR documentation built on April 23, 2024, 12:28 a.m.