verbose_timecourse_output: Returns csv with averages from analysis for procent...

In mkajano/HDXBoxeR: Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data

Returns csv with averages from analysis for procent deuteration file, standard deviation for time courses.

Description

Returns information from analysis and save it as csv file. Sets are compared to the first state in the input file.

Usage

verbose_timecourse_output(filepath, output_name, replicates = 3, ...)

Arguments

filepath	path to All.Data.csv input from HDX-Examiner.
output_name	name of the output in csv format.
replicates	number of replicates used
...	other variables for output_tc

Value

csv with analysis for procent deuteration: standard deviation, for all protein states for time courses.

Examples

file_nm<-system.file("extdata", "All_results_table.csv", package = "HDXBoxeR")
verbose_timecourse_output(file_nm,tempfile(), replicates=3)
names_states<- nm_states(file_nm)
verbose_timecourse_output(file_nm, tempfile(), seq_match=TRUE, percent=TRUE,
states=names_states, replicates=3, times="3.00s")

mkajano/HDXBoxeR documentation built on April 23, 2024, 12:28 a.m.