verbose_timepoint_output: Returns csv with averages from analysis for uptake file,...

In mkajano/HDXBoxeR: Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data

Returns csv with averages from analysis for uptake file, standard deviation, p-values.

Description

Returns information from analysis and save it as csv file. Sets are compared to the first state in the input file.

Usage

verbose_timepoint_output(filepath, output_name, replicates = 3, ...)

Arguments

filepath	path to All.Data.csv input from HDX-Examiner.
output_name	name of the output in csv format.
replicates	number of replicates used
...	other variables for output_tp

Value

csv with analysis for uptake file, standard deviation, p-values for all protein states.

Examples

file_nm<-system.file("extdata", "All_results_table.csv", package = "HDXBoxeR")
verbose_timepoint_output(file_nm, tempfile())
names_states<- nm_states(file_nm)
verbose_timepoint_output(file_nm, tempfile(), seq_match=TRUE, percent=TRUE,
states=names_states, replicates=3, times="3.00s")

mkajano/HDXBoxeR documentation built on Aug. 15, 2024, 9:12 a.m.