Files in mknoll/dataAnalysisMisc

Collection of functions for daily tasks

R/CNVprofiler.R R/assignCl.R R/barnardParallel.R R/boxGraph.R R/cantEnc.R R/cnvIntersect.R R/detClusters.R R/determineClass.R R/dotPlot.R R/drawSpiralPlot.R R/drawSpiralPlot2.R R/equivFract.R R/findAssoc.R R/findHCLSurv.R R/findOptCutoff.R R/findOptCutoffChisq.R R/findOptCutoff_Model.R R/fitModel.R R/fitModelClass.R R/fixedEffAnalysis.R R/getMeans.R R/helper.R R/libScreen.R R/localCor.R R/minimizeMissclassificationHCL.R R/mlt.R R/mutMatrix.R R/patCharact.R R/permutTTest.R R/plotForest.R R/plotForestMV.R R/plotForestParam.R R/plotForestParamMV.R R/plotForestSplit.R R/plotForestSubgroup.R R/plotForestSubgroupParam.R R/plotKM.R R/preparePdf.R R/randEffAnalysis.R R/rateDiff.R R/renameVars.R R/roc.R R/sampleAdj.R R/seq.R R/similiarity.R R/sumo.R R/tTest.R R/transf.R R/westfallYoung.R README.md man/agg.Rd man/assignCl.Rd man/barnP.Rd man/boxGraph.Rd man/cant.Rd man/cnvAug.Rd man/cnvEval.Rd man/cnvOverlap.Rd man/cnvSegGene.Rd man/createGrids.Rd man/createPatChar.Rd man/cv.Rd man/detClusters.Rd man/determineClass.Rd man/dissimM.Rd man/dotPlot.Rd man/drawSegments.Rd man/drawSpiralPlot.Rd man/encCant.Rd man/equivFract.Rd man/expSUMO.Rd man/exportSUMO.Rd man/feAnalyze.Rd man/filter.Rd man/findAssoc.Rd man/findCNVClusters.Rd man/findHCLSurv.Rd man/findOptCutoff.Rd man/findOptCutoffClass.Rd man/findOptCutoff_Model.Rd man/fitM.Rd man/fitModel-class.Rd man/fixedEffAnalysis.Rd man/getMF.Rd man/getMeans.Rd man/getMeansMT.Rd man/getQuantiles.Rd man/impSUMO.Rd man/initialize-fitModel-method.Rd man/initialize-matrixSUMO-method.Rd man/int.Rd man/localCor.Rd man/matchPattern.Rd man/matchSub.Rd man/matchSubRev.Rd man/matrixSUMO-class.Rd man/minimizeMissclassificationHCL.Rd man/mlt.Rd man/mutMatrix.Rd man/permTTest.Rd man/plotCNVChr.Rd man/plotDiff.Rd man/plotDiff2.Rd man/plotForest.Rd man/plotForestMV.Rd man/plotForestParam.Rd man/plotForestParamMV.Rd man/plotForestSplit.Rd man/plotForestSubgroup.Rd man/plotForestSubgroupParam.Rd man/plotKM.Rd man/plotModel.Rd man/plotSingle.Rd man/preparePdf.Rd man/printHCLCand.Rd man/quantifyDiff.Rd man/randEffAnalysis.Rd man/renameVars.Rd man/rocDetail.Rd man/sampleAdj.Rd man/segMerge.Rd man/simLoc450k.Rd man/tTest.Rd man/testSign.Rd man/transf.Rd man/wy.Rd vignettes/SurvivalAnalysis.Rmd vignettes/modelFit.Rmd