Man pages for mknoll/dataAnalysisMisc
Collection of functions for daily tasks

aggAggregate epxression
assignClAssign class for test data based based on correlation
boxGraphPlot some position preserving boxplots
createPatCharCreate patient characteristics table
detClustersDetermine number of clusters
determineClassTried to determine the class of data.frame columns
drawSegmentsDraw segments for boxplots
drawSpiralPlotDraw spiral plot
encCantCantor Encode
exportSUMOExport SUMO matrix
expSUMOExport to SUMO
feAnalyzeAnalyze fixed Effects
filterKeep only most variant
findAssocFind associations
findHCLSurvFind hierarchical cluster-based groups for survival...
findOptCutoffFind two differening groups in survival data
findOptCutoffClassDetect the best cutoff to match a categorical classification
fixedEffAnalysisModel based analysis with fixed effects
impSUMOImport from SUMO
initialize-matrixSUMO-methodConstrucotr matrixSUMO
localCorCalculate genimc local correlation
matrixSUMO-classAn S4 class representing a SUMO matrix experiment
minimizeMissclassificationHCLMinimize missclassification by step-wise increase of...
mltMelt and merge data w/ pheno info
permTTestPermutation t-test
plotForestCalculated univariate analysis and creates a forest plot
plotForestMVCalculates multivariate analysis and creates a forest plot
plotForestORCalculated univariate analysis and creates a forest plot
plotForestSplitCreate forest plot
plotKMPlots a Kaplan Meier survival curve with number at risk table
plotSinglePlot single gene
preparePdfCreate tex/pdf files
printHCLCandPrint Kaplan Meier plots
randEffAnalysisModel based analysis with random effects
renameVarsRename variables in a data frame using a mapping file
rocDetailCreate ROC curve
sampleAdjSample clusters from adjacence matrix
simLoc450kCalculate localtion sensitive similarity, 450k
transfTransform expression data
tTestRow-wise t-Test
wyWestfall Young p-value correction
mknoll/dataAnalysisMisc documentation built on May 20, 2019, 4:11 p.m.