fixedEffAnalysis: Model based analysis with fixed effects

In mknoll/dataAnalysisMisc: Collection of functions for daily tasks

Model based analysis with fixed effects

Description

Model based analysis with fixed effects

Usage

fixedEffAnalysis(
  data,
  pheno,
  frm0 = as.formula(VAL ~ 1),
  frm = as.formula(VAL ~ GRP),
  type = "lm",
  nCores = NULL,
  complete.cases = F,
  padj = "BH"
)

Arguments

data	data.frame containg a sample per column and one gene per row
pheno	Pheno data.frame with columns representing variables and rows patients. Must be matched.
frm0	Null-model formula
frm	Full-model formula
type	type of analysis, can be "lm" (linear), "nb" (negativ binomial), "bin" (logistic regression)
nCores	number of cores to use
complete.cases	automatically remove incomplete data (NA, Inf)

mknoll/dataAnalysisMisc documentation built on Feb. 4, 2024, 8:16 a.m.