Files in mknoll/dataAnalysisMisc
Collection of functions for daily tasks
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/CNVprofiler.R
R/assignCl.R
R/barnardParallel.R
R/boxGraph.R
R/cantEnc.R
R/cnvIntersect.R
R/detClusters.R
R/determineClass.R
R/dotPlot.R
R/drawSpiralPlot.R
R/drawSpiralPlot2.R
R/equivFract.R
R/findAssoc.R
R/findHCLSurv.R
R/findOptCutoff.R
R/findOptCutoffChisq.R
R/findOptCutoff_Model.R
R/fitModel.R
R/fitModelClass.R
R/fixedEffAnalysis.R
R/getMeans.R
R/helper.R
R/libScreen.R
R/localCor.R
R/minimizeMissclassificationHCL.R
R/mlt.R
R/mutMatrix.R
R/patCharact.R
R/permutTTest.R
R/plotForest.R
R/plotForestMV.R
R/plotForestParam.R
R/plotForestParamMV.R
R/plotForestSplit.R
R/plotForestSubgroup.R
R/plotForestSubgroupParam.R
R/plotKM.R
R/preparePdf.R
R/randEffAnalysis.R
R/rateDiff.R
R/renameVars.R
R/roc.R
R/sampleAdj.R
R/seq.R
R/similiarity.R
R/sumo.R
R/tTest.R
R/transf.R
R/westfallYoung.R
README.md
inst/extdata/data_m.csv
inst/extdata/meta.csv
man/agg.Rd
man/assignCl.Rd
man/barnP.Rd
man/boxGraph.Rd
man/cant.Rd
man/cnvAug.Rd
man/cnvEval.Rd
man/cnvOverlap.Rd
man/cnvSegGene.Rd
man/createGrids.Rd
man/createPatChar.Rd
man/cv.Rd
man/detClusters.Rd
man/determineClass.Rd
man/dissimM.Rd
man/dotPlot.Rd
man/drawSegments.Rd
man/drawSpiralPlot.Rd
man/encCant.Rd
man/equivFract.Rd
man/expSUMO.Rd
man/exportSUMO.Rd
man/feAnalyze.Rd
man/filter.Rd
man/findAssoc.Rd
man/findCNVClusters.Rd
man/findHCLSurv.Rd
man/findOptCutoff.Rd
man/findOptCutoffClass.Rd
man/findOptCutoff_Model.Rd
man/fitM.Rd
man/fitModel-class.Rd
man/fixedEffAnalysis.Rd
man/getMF.Rd
man/getMeans.Rd
man/getMeansMT.Rd
man/getQuantiles.Rd
man/impSUMO.Rd
man/initialize-fitModel-method.Rd
man/initialize-matrixSUMO-method.Rd
man/int.Rd
man/localCor.Rd
man/matchPattern.Rd
man/matchSub.Rd
man/matchSubRev.Rd
man/matrixSUMO-class.Rd
man/minimizeMissclassificationHCL.Rd
man/mlt.Rd
man/mutMatrix.Rd
man/permTTest.Rd
man/plotCNVChr.Rd
man/plotDiff.Rd
man/plotDiff2.Rd
man/plotForest.Rd
man/plotForestMV.Rd
man/plotForestParam.Rd
man/plotForestParamMV.Rd
man/plotForestSplit.Rd
man/plotForestSubgroup.Rd
man/plotForestSubgroupParam.Rd
man/plotKM.Rd
man/plotModel.Rd
man/plotSingle.Rd
man/preparePdf.Rd
man/printHCLCand.Rd
man/quantifyDiff.Rd
man/randEffAnalysis.Rd
man/renameVars.Rd
man/rocDetail.Rd
man/sampleAdj.Rd
man/segMerge.Rd
man/simLoc450k.Rd
man/tTest.Rd
man/testSign.Rd
man/transf.Rd
man/wy.Rd
src-i386/graph.c
src-i386/tests.c
src/graph.c
src/graph.o
src/seq.c
src/seq.o
src/tests.c
src/tests.o
vignettes/SurvivalAnalysis.Rmd
vignettes/modelFit.Rmd
