API for mksamur/RTCGAToolbox
A new tool for exporting TCGA Firehose data
| Global functions | |
|---|---|
| .TCGAcols | Source code |
| .ansRangeNames | Source code |
| .barcodeUUID | Source code |
| .checkFileSize | Source code |
| .convertRangeBioc | Source code |
| .exportFiles | Source code |
| .extractList | Source code |
| .fileSelect | Source code |
| .files_from_html_table | Source code |
| .findBuild | Source code |
| .findCol | Source code |
| .findSampleCol | Source code |
| .findUniqueAnnoCol | Source code |
| .getAnswer | Source code |
| .getBuild | Source code |
| .getDataMatrix | Source code |
| .getFilenames | Source code |
| .getGISTIC | Source code |
| .getLinks | Source code |
| .getListData | Source code |
| .getMethyl | Source code |
| .hasConsistentRanges | Source code |
| .hasExperimentData | Source code |
| .hasInfo | Source code |
| .hasOldAPI | Source code |
| .hasOldGISTIC | Source code |
| .hasRangeNames | Source code |
| .makeExprMat | Source code |
| .makeGRangesFromDataFrame | Source code |
| .makeGRangesListFromDataFrame | Source code |
| .makeRaggedExperimentFromDataFrame | Source code |
| .makeRangedSummarizedExperimentFromDataFrame | Source code |
| .makeSummarizedExperimentFromDataFrame | Source code |
| .mergeNames | Source code |
| .mergePlatforms | Source code |
| .missingRanges | Source code |
| .nameClean | Source code |
| .omitAdditionalIdx | Source code |
| .removeNASeq | Source code |
| .removeShell | Source code |
| .rmNAse | Source code |
| .runOnDupElements | Source code |
| .samplesAsCols | Source code |
| .searchPlatform | Source code |
| .setAnnoRows | Source code |
| .setCache | Source code |
| .standardizeBC | Source code |
| .standardizeStrand | Source code |
| .standardstrand | Source code |
| .stdIDs | Source code |
| .unNestList | Source code |
| .validateNCBI | Source code |
| CorResult-class | Man page |
| DGEResult-class | Man page |
| FirehoseCGHArray-class | Man page |
| FirehoseData-class | Man page |
| FirehoseGISTIC-class | Man page |
| FirehoseMethylationArray-class | Man page |
| FirehosemRNAArray-class | Man page |
| RTCGAToolbox | Man page |
| accmini | Man page |
| biocExtract | Man page Source code |
| getBroadSubtypes | Man page Source code |
| getData | Man page |
| getData,ANY-method | Man page |
| getData,FirehoseData-method | Man page |
| getData,FirehoseGISTIC-method | Man page |
| getFirehoseAnalyzeDates | Man page Source code |
| getFirehoseData | Man page Source code |
| getFirehoseDatasets | Man page Source code |
| getFirehoseRunningDates | Man page Source code |
| getGISTICPeaks | Man page Source code |
| getLinks | Man page Source code |
| getMutationRate | Man page Source code |
| hg19.ucsc.gene.locations | Man page |
| isEmpty,FirehoseGISTIC-method | Man page |
| makeSummarizedExperimentFromGISTIC | Man page Source code |
| selectType | Man page |
| selectType,FirehoseData-method | Man page |
| show,FirehoseData-method | Man page |
| showResults | Man page |
| showResults,CorResult,CorResult-method | Man page |
| showResults,CorResult-method | Man page |
| showResults,DGEResult,DGEResult-method | Man page |
| showResults,DGEResult-method | Man page |
| updateObject,FirehoseData-method | Man page |
| updateObject,FirehoseGISTIC-method | Man page |
