getBroadSubtypes: Download expression-based cancer subtypes from the Broad...
In mksamur/RTCGAToolbox: A new tool for exporting TCGA Firehose data
View source: R/getBroadSubtypes.R
getBroadSubtypes R Documentation
Download expression-based cancer subtypes from the Broad Institute
Description
Obtain the mRNA expression clustering results from the
Broad Institute for a specific cancer code (see getFirehoseDatasets).
Usage
getBroadSubtypes(dataset, clust.alg = c("CNMF", "ConsensusPlus"))
Arguments
dataset
A TCGA cancer code, e.g. "OV" for ovarian cancer
clust.alg
The selected cluster algorithm, either "CNMF" or
"ConsensusPlus" (default "CNMF")
Value
A data.frame of cluster and silhouette values
Author(s)
Ludwig Geistlinger
Examples
co <- getBroadSubtypes("COAD", "CNMF")
head(co)
mksamur/RTCGAToolbox documentation built on Oct. 29, 2023, 10:06 p.m.
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View source: R/getBroadSubtypes.R
| getBroadSubtypes | R Documentation |
Download expression-based cancer subtypes from the Broad Institute
Description
Obtain the mRNA expression clustering results from the Broad Institute for a specific cancer code (see getFirehoseDatasets).
Usage
getBroadSubtypes(dataset, clust.alg = c("CNMF", "ConsensusPlus"))
Arguments
dataset |
A TCGA cancer code, e.g. "OV" for ovarian cancer |
clust.alg |
The selected cluster algorithm, either "CNMF" or "ConsensusPlus" (default "CNMF") |
Value
A data.frame of cluster and silhouette values
Author(s)
Ludwig Geistlinger
Examples
co <- getBroadSubtypes("COAD", "CNMF")
head(co)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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