selectType: Accessor function for the FirehoseData object

In mksamur/RTCGAToolbox: A new tool for exporting TCGA Firehose data

Accessor function for the FirehoseData object

Description

An accessor function for the FirehoseData class. An argument will specify the data type to return See FirehoseData-class for more details.

Usage

selectType(object, dataType)

Arguments

object	A FirehoseData class object
dataType	A data type, see details.

Details

• clinical - Get the clinical data slot

• RNASeqGene - RNASeqGene

• RNASeq2GeneNorm - Normalized

• miRNASeqGene - micro RNA SeqGene

• CNASNP - Copy Number Alteration

• CNVSNP - Copy Number Variation

• CNASeq - Copy Number Alteration

• CNACGH - Copy Number Alteration

• Methylation - Methylation

• mRNAArray - Messenger RNA

• miRNAArray - micro RNA

• RPPAArray - Reverse Phase Protein Array

• Mutation - Mutations

• GISTIC - GISTIC v2 scores and probabilities

Value

The data type element of the FirehoseData object

mksamur/RTCGAToolbox documentation built on Oct. 29, 2023, 10:06 p.m.