Man pages for mkumar-rapttx/RAPTR
Custom R functions for RAPT Therapeutics
| collapse_probe_ids | Collapse a expression of probes to gene symbols |
| col_numeric_min_max | Customized version of scales::col_numeric with extra control... |
| convert_probe_ids | Title |
| corner | Returns the first or last rows and columns of a subsettable... |
| downloadGEO | Download files associated with a GEO accession number |
| getFeatureData | Download feature data associated with a GEO accession number |
| getMaxScores | Return tibble with max enrichment score for each gene set |
| getMetaData | Download meta data associated with a GEO accession number |
| getProbeData | Download probe data associated with a GEO accession number |
| heatmap_color | Title |
| import_CEL | import a CEL file |
| kernelEnrichment | Perform gene set enrichment analysis using a kernel-weighted... |
| kernelEnrichmentMulti | Perform gene set enrichment analysis using a kernel-weighted... |
| kernelEnrichmentPlotter | Plot the scores returned by... |
| plot_leading_edge | Plot expression of leading edge genes given enrichment result |
| read_enrichR | Import a collection of gene sets downloaded from enrichR |
| robust_z | Calculates a robust Z-score that does not have "exploding"... |
| run_fgsea | Run GSEA given differential expression analysis and list of... |
| split_string | Split a string at every position of a delimiter, and returns... |
| theme_custom | theme_custom |
| theme_rapt | theme_rapt |
| transpose_tibble | transpose_tibble |
| trunc_range | Truncates a values to lower and/or upper bounds |
