plot_leading_edge: Plot expression of leading edge genes given enrichment result
In mkumar-rapttx/RAPTR: Custom R functions for RAPT Therapeutics
View source: R/enrichment_analysis.R
Description
Plot expression of leading edge genes given enrichment result
Usage
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plot_leading_edge(
enrichment_result,
pathway_name,
dds,
orthologs = human_mouse_orthologs,
symbols = gene_symbols
)
Arguments
enrichment_result
result of running run_fgsea
pathway_name
pathway to plot leading genes
dds
DESEQ2 dds object used for running fgsea
orthologs
table containing mapping information between human and mouse gene symbols
symbols
table containing mapping between mouse ensembl_ids and gene symbols
mkumar-rapttx/RAPTR documentation built on July 3, 2021, 10:14 p.m.
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View source: R/enrichment_analysis.R
Description
Plot expression of leading edge genes given enrichment result
Usage
1 2 3 4 5 6 7 | plot_leading_edge(
enrichment_result,
pathway_name,
dds,
orthologs = human_mouse_orthologs,
symbols = gene_symbols
)
|
Arguments
enrichment_result |
result of running run_fgsea |
pathway_name |
pathway to plot leading genes |
dds |
DESEQ2 dds object used for running fgsea |
orthologs |
table containing mapping information between human and mouse gene symbols |
symbols |
table containing mapping between mouse ensembl_ids and gene symbols |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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