run_fgsea: Run GSEA given differential expression analysis and list of...

In mkumar-rapttx/RAPTR: Custom R functions for RAPT Therapeutics

Description

Run GSEA given differential expression analysis and list of gene sets

Usage

run_fgsea(
  resObj,
  gene_sets,
  orthologs = human_mouse_orthologs,
  symbols = gene_symbols
)

Arguments

resObj	ouput of running results on a DESEQ2 dds object
gene_sets	list of gene sets to run enrichment. See read_enrichR
orthologs	table containing mapping information between human and mouse gene symbols
symbols	table containing mapping between mouse ensembl_ids and gene symbols

mkumar-rapttx/RAPTR documentation built on July 3, 2021, 10:14 p.m.