Tags: Add or Remove Job Tags
In mllg/batchtools: Tools for Computation on Batch Systems

Tags	R Documentation

Add or Remove Job Tags

Description

Add and remove arbitrary tags to jobs.

Usage

addJobTags(ids = NULL, tags, reg = getDefaultRegistry())

removeJobTags(ids = NULL, tags, reg = getDefaultRegistry())

getUsedJobTags(ids = NULL, reg = getDefaultRegistry())

Arguments

`ids`	[`data.frame` or `integer`] A `data.frame` (or `data.table`) with a column named “job.id”. Alternatively, you may also pass a vector of integerish job ids. If not set, defaults to all jobs. Invalid ids are ignored.
`tags`	[`character`] Tags to add or remove as strings. Each tag may consist of letters, numbers, underscore and dots (pattern “^[[:alnum:]_.]+”).
`reg`	[`Registry`] Registry. If not explicitly passed, uses the default registry (see `setDefaultRegistry`).

Value

[data.table] with job ids affected (invisible).

Examples


tmp = makeRegistry(file.dir = NA, make.default = FALSE)
ids = batchMap(sqrt, x = -3:3, reg = tmp)

# Add new tag to all ids
addJobTags(ids, "needs.computation", reg = tmp)
getJobTags(reg = tmp)

# Add more tags
addJobTags(findJobs(x < 0, reg = tmp), "x.neg", reg = tmp)
addJobTags(findJobs(x > 0, reg = tmp), "x.pos", reg = tmp)
getJobTags(reg = tmp)

# Submit first 5 jobs and remove tag if successful
ids = submitJobs(1:5, reg = tmp)
if (waitForJobs(reg = tmp))
  removeJobTags(ids, "needs.computation", reg = tmp)
getJobTags(reg = tmp)

# Grep for warning message and add a tag
addJobTags(grepLogs(pattern = "NaNs produced", reg = tmp), "div.zero", reg = tmp)
getJobTags(reg = tmp)

# All tags where tag x.neg is set:
ids = findTagged("x.neg", reg = tmp)
getUsedJobTags(ids, reg = tmp)

mllg/batchtools documentation built on April 21, 2023, 11:49 a.m.