runHook: Trigger Evaluation of Custom Function

In mllg/batchtools: Tools for Computation on Batch Systems

Trigger Evaluation of Custom Function

Description

Hooks allow to trigger functions calls on specific events. They can be specified via the ClusterFunctions and are triggered on the following events:

pre.sync

function(reg, fns, ...): Run before synchronizing the registry on the master. fn is the character vector of paths to the update files.

post.sync

function(reg, updates, ...): Run after synchronizing the registry on the master. updates is the data.table of processed updates.

pre.submit.job

function(reg, ...): Run before a job is successfully submitted to the scheduler on the master.

post.submit.job

function(reg, ...): Run after a job is successfully submitted to the scheduler on the master.

pre.submit

function(reg, ...): Run before any job is submitted to the scheduler.

post.submit

function(reg, ...): Run after a jobs are submitted to the schedule.

pre.do.collection

function(reg, reader, ...): Run before starting the job collection on the slave. reader is an internal cache object.

post.do.collection

function(reg, updates, reader, ...): Run after all jobs in the chunk are terminated on the slave. updates is a data.table of updates which will be merged with the Registry by the master. reader is an internal cache object.

pre.kill

function(reg, ids, ...): Run before any job is killed.

post.kill

function(reg, ids, ...): Run after jobs are killed. ids is the return value of killJobs.

Usage

runHook(obj, hook, ...)

Arguments

obj	[Registry | JobCollection] Registry which contains the ClusterFunctions with element “hooks” or a JobCollection which holds the subset of functions which are executed remotely.
hook	[character(1)] ID of the hook as string.
...	[ANY] Additional arguments passed to the function referenced by hook. See description.

Value

Return value of the called function, or NULL if there is no hook with the specified ID.

mllg/batchtools documentation built on April 21, 2023, 11:49 a.m.