showLog: Inspect Log Files

In mllg/batchtools: Tools for Computation on Batch Systems

Inspect Log Files

Description

showLog opens the log in the pager. For customization, see file.show. getLog returns the log as character vector.

Usage

showLog(id, reg = getDefaultRegistry())

getLog(id, reg = getDefaultRegistry())

Arguments

id	[integer(1) or data.table] Single integer to specify the job or a data.table with column job.id and exactly one row.
reg	[Registry] Registry. If not explicitly passed, uses the default registry (see setDefaultRegistry).

Value

Nothing.

See Also

Other debug: getErrorMessages(), getStatus(), grepLogs(), killJobs(), resetJobs(), testJob()

Examples

tmp = makeRegistry(file.dir = NA, make.default = FALSE)

# Create some dummy jobs
fun = function(i) {
  if (i == 3) stop(i)
  if (i %% 2 == 1) warning("That's odd.")
}
ids = batchMap(fun, i = 1:5, reg = tmp)
submitJobs(reg = tmp)
waitForJobs(reg = tmp)
getStatus(reg = tmp)

writeLines(getLog(ids[1], reg = tmp))
## Not run: 
showLog(ids[1], reg = tmp)

## End(Not run)

grepLogs(pattern = "warning", ignore.case = TRUE, reg = tmp)

mllg/batchtools documentation built on April 21, 2023, 11:49 a.m.