concatenate_new_marker: Concatenate new marker

In mmollina/MAPPoly: Genetic Linkage Maps in Autopolyploids

Concatenate new marker

Description

Inserts a new marker at the end of the sequence, taking into account the two-point information

Usage

concatenate_new_marker(X = NULL, d, sh = NULL, seq.num = NULL, ploidy, mrk = 1)

Arguments

X	a list of matrices whose columns represent homologous chromosomes and the rows represent markers
d	the dosage of the inserted marker
sh	a list of shared alleles between all markers in the sequence
seq.num	a vector of integers containing the number of each marker in the raw data file
ploidy	the ploidy level
mrk	the marker to be inserted

Value

a unique list of matrices representing linkage phases

mmollina/MAPPoly documentation built on March 8, 2024, 2:04 a.m.