API for mnodzenski/epistasisGA
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method
| Global functions | |
|---|---|
| GADGETS | Man page Source code |
| GxE.fitness.score | Man page Source code |
| GxE.test | Man page Source code |
| GxE_fitness_score_mvlm | Source code |
| GxE_fitness_score_mvlm_list | Source code |
| GxE_mvlm_fitness_vec_mat | Source code |
| GxE_test | Source code |
| as_integer | Source code |
| case | Man page |
| case.gxe | Man page |
| case.mci | Man page |
| check_convergence | Source code |
| check_max_gens | Source code |
| chrom.fitness.score | Man page Source code |
| chrom_fitness_list | Source code |
| chrom_fitness_score | Source code |
| combine.islands | Man page Source code |
| compute.graphical.scores | Man page Source code |
| compute_dif_vecs | Source code |
| compute_population_fitness | Source code |
| concat | Source code |
| concat_list | Source code |
| dad | Man page |
| dad.gxe | Man page |
| dad.mci | Man page |
| epistasis.test | Man page Source code |
| epistasisGA | Man page |
| epistasis_test | Source code |
| epistasis_test_null_scores | Source code |
| epistasis_test_permute | Source code |
| exposure | Man page |
| find_high_risk | Source code |
| find_top_chrom | Source code |
| get_target_snps_ld_blocks | Source code |
| global.test | Man page Source code |
| initiate_population | Source code |
| mom | Man page |
| mom.gxe | Man page |
| mom.mci | Man page |
| n2log_epistasis_pvals | Source code |
| n_neg_high_risk | Source code |
| n_pos_high_risk | Source code |
| network.plot | Man page Source code |
| permute.dataset | Man page Source code |
| preprocess.genetic.data | Man page Source code |
| run.gadgets | Man page Source code |
| run_GADGETS | Source code |
| scalar_max | Source code |
| scalar_min | Source code |
| seq_by2 | Source code |
| sign_scalar | Source code |
| snp.annotations | Man page |
| snp.annotations.mci | Man page |
| sort_by_order | Source code |
| split_int_mat | Source code |
| split_logical_mat | Source code |
| sub_colmeans | Source code |
| sub_colsums | Source code |
| sub_rowsums_both_one | Source code |
| sub_rowsums_parent_weights | Source code |
| sub_rowsums_start | Source code |
| subset_lmatrix | Source code |
| subset_lmatrix_cols | Source code |
| subset_lmatrix_rows | Source code |
| subset_matrix | Source code |
| subset_matrix_cols | Source code |
| subset_matrix_rows | Source code |
| unique_chrom_list | Source code |
| weighted_sub_colsums | Source code |
