get_state | R Documentation |
Extract the state of each individual at a given time
get_state(data, t, NAafterTmax = FALSE)
data |
data.frame containing |
t |
time at which extract the state |
NAafterTmax |
if TRUE, return NA if t > Tmax otherwise return the state associated with Tmax (useful when individuals has different lengths) |
a vector containing the state of each individual at time t
Cristian Preda, Quentin Grimonprez
# Simulate the Jukes-Cantor model of nucleotide replacement
K <- 4
PJK <- matrix(1 / 3, nrow = K, ncol = K) - diag(rep(1 / 3, K))
lambda_PJK <- c(1, 1, 1, 1)
d_JK <- generate_Markov(n = 10, K = K, P = PJK, lambda = lambda_PJK, Tmax = 10)
# get the state of each individual at time t = 6
get_state(d_JK, 6)
# get the state of each individual at time t = 12 (> Tmax)
get_state(d_JK, 12)
# if NAafterTmax = TRUE, it will return NA for t > Tmax
get_state(d_JK, 12, NAafterTmax = TRUE)
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