statetable | R Documentation |
Calculates a frequency table counting the number of times each pair of states were observed in successive observation times.
statetable(data, removeDiagonal = FALSE)
data |
data.frame containing |
removeDiagonal |
if TRUE, does not count transition from a state i to i |
a matrix of size K*K
containing the number of transition for each pair
Quentin Grimonprez
Other Descriptive statistics:
boxplot.timeSpent()
,
compute_duration()
,
compute_number_jumps()
,
compute_time_spent()
,
estimate_pt()
,
hist.duration()
,
hist.njump()
,
plot.pt()
,
plotData()
,
summary_cfd()
# Simulate the Jukes-Cantor model of nucleotide replacement
K <- 4
PJK <- matrix(1 / 3, nrow = K, ncol = K) - diag(rep(1 / 3, K))
lambda_PJK <- c(1, 1, 1, 1)
d_JK <- generate_Markov(n = 10, K = K, P = PJK, lambda = lambda_PJK, Tmax = 10)
# table of transitions
statetable(d_JK)
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