hist.duration | R Documentation |
Plot the duration
## S3 method for class 'duration'
hist(x, breaks = NULL, ...)
x |
output of |
breaks |
number of breaks. If not given, use the Sturges rule |
... |
parameters for |
a ggplot
object that can be modified using ggplot2
package.
Quentin Grimonprez
compute_duration
Other Descriptive statistics:
boxplot.timeSpent()
,
compute_duration()
,
compute_number_jumps()
,
compute_time_spent()
,
estimate_pt()
,
hist.njump()
,
plot.pt()
,
plotData()
,
statetable()
,
summary_cfd()
# Simulate the Jukes-Cantor model of nucleotide replacement
K <- 4
PJK <- matrix(1 / 3, nrow = K, ncol = K) - diag(rep(1 / 3, K))
lambda_PJK <- c(1, 1, 1, 1)
d_JK <- generate_Markov(n = 10, K = K, P = PJK, lambda = lambda_PJK, Tmax = 10)
# compute duration of each individual
duration <- compute_duration(d_JK)
hist(duration)
# modify the plot using ggplot2
library(ggplot2)
hist(duration) +
labs(title = "Distribution of the duration")
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