Files in moggces/Rcurvep

Concentration-Response Data Analysis using Curvep

.Rbuildignore

.Rhistory

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/Rcurvep-package.R R/curveclass2_base.R R/curvep.R R/datasets.R R/init_java.R R/rcurvep_bmr.R R/rcurvep_checks.R R/rcurvep_combirun.R R/rcurvep_mergeobj.R R/rcurvep_onerun.R R/rcurvep_plot.R R/rcurvep_print.R R/rcurvep_simulate.R R/rcurvep_summary.R R/tcplfit_hillbase.R R/tcplfit_obj.R R/tcplfit_onerun.R README.md

Rcurvep.Rproj

_pkgdown.yml

cran-comments.md

data-raw/.gitignore

data-raw/data.json

data-raw/data_folder_compilation.Rmd

data-raw/fit_exploration/distmoved_thres_all.txt

data-raw/fit_exploration/percent_thres_all.txt

data-raw/fit_exploration/simi_thres_all.txt

data-raw/fit_exploration/test_comment_heuristic.Rmd data-raw/fit_exploration/test_various_fit.Rmd data-raw/input2json.R data-raw/json2input.R data-raw/minimum_dataset/test_n_chem_bootsample_1.Rmd data-raw/minimum_dataset/test_n_chem_bootsample_2.Rmd data-raw/minimum_dataset/test_n_chem_bootsample_3.Rmd data-raw/output2json.R data-raw/zfish_data_split.R

data-raw/zfishbeh.rds

data-raw/zfishdev.rds

data/zfishbeh.rda

data/zfishdev.rda

data/zfishdev_act.rda

data/zfishdev_all.rda

inst/REFERENCES.bib

inst/java/curve-fitting.jar

java/lib/commons-lang3-3.8.1.jar

java/lib/commons-math3-3.6.1.jar

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/CurveClassFit1.class

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/CurveClassFit1.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/CurveClassFit2.class

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/CurveClassFit2.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/CurveClassFit3.class

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/CurveClassFit3.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/FittingResult.class

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/FittingResult.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/algorithm/AlgotithmUtils.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/algorithm/CurveClass2.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/algorithm/HillFit.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/algorithm/Masking.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/service/CurveFittingService.java

java/src/main/java/gov/nih/ncats/ifx/qhts/curvefitting/service/CurveFittingServiceImpl.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/Base64Converter.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/HillConstants.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/HillStat.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/HtsUtil.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/NCGCConstants.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/PlateUtil.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/Stat.java

java/src/main/java/gov/nih/ncats/ifx/qhts/utils/Util.java

man/Rcurvep-package.Rd man/cal_knee_point.Rd man/combi_run_rcurvep.Rd man/create_dataset.Rd man/curvep.Rd man/curvep_defaults.Rd man/estimate_dataset_bmr.Rd

man/figures/bmr_diagnostic_plot_example.png

man/figures/rcurvep_scheme2.png

man/fit_cc2_modl.Rd man/fit_modls.Rd man/get_hill_fit_config.Rd man/merge_rcurvep_objs.Rd man/plot.rcurvep_bmr.Rd man/run_fit.Rd man/run_rcurvep.Rd man/summarize_fit_output.Rd man/summarize_rcurvep_output.Rd man/zfishbeh.Rd man/zfishdev.Rd man/zfishdev_act.Rd man/zfishdev_all.Rd tests/testthat.R tests/testthat/test-bmr.R tests/testthat/test-combirun.R tests/testthat/test-hillbase.R tests/testthat/test-hilldataset.R tests/testthat/test-hillsum.R tests/testthat/test-input.R tests/testthat/test-mergeobj.R tests/testthat/test-onerun.R tests/testthat/test-simulate.R tests/testthat/test-summary.R

vignettes/.gitignore

vignettes/future_rcurvep.Rmd vignettes/practical_rcurvep.Rmd

moggces/Rcurvep documentation built on Feb. 6, 2024, 3:30 a.m.