download_expression_data: Download RNA-Seq expression runs from SRA
In momeara/CalCEN: CalCEN: Estimate Co-Expression Networks
View source: R/download_expression_data.R
download_expression_data R Documentation
Download RNA-Seq expression runs from SRA
Description
Use prefetch to download data from the SRA to
Usage
download_expression_data(runs, sra_dir, verbose = TRUE)
Arguments
runs:
data.frame with columns ['study_accession', 'run_accession']
sra_dir:
directory where to save the expression data
Details
<sra_dir>/<run_accesion>/<run_accession>.sra
Each expression run is ~8 Gb, so roughly 1000 runs will require
approximately 8 terabytes of space
momeara/CalCEN documentation built on Jan. 3, 2023, 7:22 p.m.
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View source: R/download_expression_data.R
| download_expression_data | R Documentation |
Download RNA-Seq expression runs from SRA
Description
Use prefetch to download data from the SRA to
Usage
download_expression_data(runs, sra_dir, verbose = TRUE)
Arguments
runs: |
data.frame with columns ['study_accession', 'run_accession'] |
sra_dir: |
directory where to save the expression data |
Details
<sra_dir>/<run_accesion>/<run_accession>.sra
Each expression run is ~8 Gb, so roughly 1000 runs will require approximately 8 terabytes of space
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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