retrieve_sra_runs: Retrieve SRA runs from the SRAmeta database

In momeara/CalCEN: CalCEN: Estimate Co-Expression Networks

Retrieve SRA runs from the SRAmeta database

Description

Retrieve SRA runs from the SRAmeta database

Usage

retrieve_sra_runs(sra_con, curated_studies, verbose = TRUE)

Arguments

sra_con	a DBI connection to the SRA database. E.g. the result of calling get_sra_connection()
curated_studies	a character vector with study_accession values or a data.frame with a column study_accession
verbose	(default: TRUE)

Value

data.frame with one run per row with columns in curated_studies an additionally:

study_alias study_title experiment_accession sample_accession library_strategy library_layout sample_alias taxon_id scientific_name common_name run_accession run_alias

momeara/CalCEN documentation built on Jan. 3, 2023, 7:22 p.m.