plot_firing_density_by_neuron: Firing smoothed per-neuron firing density by neuron across...
In momeara/mema: Multi-Electrode Midbrain Analysis

View source: R/plot_firing_density_by_neuron.R

plot_firing_density_by_neuron

R Documentation

Firing smoothed per-neuron firing density by neuron across the experiment

Description

heat-map average firing rate x-axis experiment in seconds y-axis neuron index cell KDE smoothe estimate of the firing rate

Usage

plot_firing_density_by_neuron(
  experiment,
  plot_width = 10,
  plot_height = 4,
  output_base = "product/plots",
  verbose = TRUE
)

Details

experiment: experiment dataset loaded with mema::load_experiment(...)

plot_width/plot_height: dimensions of the output plot

returns: the ggplot2 Saves the result to product/plots/firing_rate_<experiment_tag>_<date_code>.(pdf|png) It save both .pdf and .png because it's easier to email etc small pngs while for use in an a manuscript having the vector version means that it can be tweaked with illustrator

momeara/mema documentation built on Nov. 4, 2022, noon