API for montilab/iEDGE
integrative analysis of (epi-)DNA and gene expression data
| Global functions | |
|---|---|
| VERBOSE | Source code |
| add_direction | Source code |
| assert | Source code |
| calc_sobel | Man page Source code |
| calc_sobel_mat | Source code |
| calc_sobel_y1_z | Source code |
| calc_sobel_y1_z1 | Source code |
| calc_sobel_y_z1 | Source code |
| cis_order | Source code |
| clustColors | Source code |
| col.gradient | Source code |
| construct_iEDGE | Man page Source code |
| cumineq | Source code |
| cv | Source code |
| cvm | Source code |
| data2html | Source code |
| dir.test | Source code |
| do_de_enrichment | Source code |
| file.ext | Source code |
| file.stub | Source code |
| file.test | Source code |
| focal_or_arm | Source code |
| genIndex | Source code |
| genName | Source code |
| generate_heatmap_json | Source code |
| get_chr | Source code |
| get_cis_genes | Source code |
| get_colors | Source code |
| get_enrich_heatmap | Source code |
| get_hyper_edges | Source code |
| get_hyper_wrapper | Source code |
| get_sig_single | Source code |
| get_sig_split | Source code |
| get_summary | Source code |
| hcopt | Source code |
| iEDGE_DE | Man page Source code |
| iEDGE_DE_inner | Source code |
| iEDGE_UI | Man page Source code |
| interleave | Source code |
| lapplyn | Source code |
| list.append | Source code |
| list.intersect | Source code |
| list2table | Source code |
| ljust | Source code |
| lmchoose | Source code |
| load.var | Source code |
| lookup.fun | Source code |
| make.dir | Source code |
| make_GISTIC2 | Man page Source code |
| make_GISTIC2_focal | Man page Source code |
| make_bipartite_html | Source code |
| make_boxplotdataset | Source code |
| match.nona | Source code |
| matchIndex | Source code |
| matrix2list | Source code |
| mchoose | Source code |
| mmatch | Source code |
| my.levels | Source code |
| my.nlevels | Source code |
| my.tabulate | Source code |
| my.write.table | Source code |
| ntabulate | Source code |
| prune | Source code |
| pruneFactor | Source code |
| pruneFactors | Source code |
| pval2fdr | Source code |
| read.csv.delim | Source code |
| read.delim.wsave | Source code |
| read.tab.delim | Source code |
| read_GISTIC2_broad | Source code |
| read_GISTIC2_broad_with_thres | Source code |
| read_GISTIC2_focal | Source code |
| read_GISTIC2_focal_with_thres | Source code |
| read_gmt | Man page Source code |
| repmat | Source code |
| rjust | Source code |
| robust.load | Source code |
| rowMax | Source code |
| rowMin | Source code |
| run_hyperEnrichment | Man page Source code |
| run_hyperEnrichment_pruned | Source code |
| run_hyperEnrichment_unpruned | Source code |
| run_hyperEnrichment_wrapper | Man page Source code |
| run_iEDGE | Man page Source code |
| run_limma | Source code |
| run_limma_accessory | Source code |
| sd.map | Source code |
| strip.path | Source code |
| subset_group_min | Source code |
| table2list | Source code |
| to.eSet | Source code |
| to.hex | Source code |
| to_main_index | Source code |
| to_table_html | Source code |
| trans_order | Source code |
| uniquefy | Source code |
| upper.case | Source code |
| value.cap | Source code |
| var2string | Source code |
| which.2D | Source code |
| which.rowMax | Source code |
| which.rowMin | Source code |
| write_JSON_df | Source code |
| write_JSON_list | Source code |
| write_bipartite_JSON | Source code |
| write_byalt_boxplot | Source code |
| write_byalt_html | Source code |
