construct_iEDGE: Construct iEDGE input object

In montilab/iEDGE: integrative analysis of (epi-)DNA and gene expression data

Description

Construct iEDGE input object

Usage

construct_iEDGE(cn, gep, cisgenes, transgenes = NA, cn.fdat, gep.fdat,
  cn.pdat = NA, gep.pdat = NA)

Arguments

cn	matrix of epi-DNA alterations (m rows of alterations by n samples)
gep	matrix of gene expression (g rows of genes by n samples)
cisgenes	list of cis genes corresponding to each row in cn
transgenes	optional list of trans genes corresponding to each row in cn
cn.fdat	data frame of row annotations for cn, must have column of row identifiers, and optionally column of direction identifiers if one-sided DE tests are applied
gep.fdat	data frame of row annotaions for gep, must have column of row identifiers
cn.pdat	optional data frame of column annotations for cn
gep.pdat	optional data frame of column annotations for gep

montilab/iEDGE documentation built on Sept. 7, 2019, 4:18 a.m.