Files in montilab/iEDGE
integrative analysis of (epi-)DNA and gene expression data

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/hyperEnrichment_util.R R/iEDGE_UI.R R/iEDGE_util.R R/make_GISTIC2.R R/misc.R R/run_hyperEnrichment.R README.md
docs/LICENSE-text.html
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vignettes/TCGA_PAAD/tables/TCGA_PAAD_trans_sig_fdr_0.01_fc_1.5.txt
vignettes/iedge-simple-run.Rmd
vignettes/iedge-simple-run.nb.html
vignettes/iedge-tcga-example.Rmd
vignettes/iedge-tcga-example.nb.html
vignettes/scripts_TCGA_pancancer/1.preprocess_all_TCGA.R vignettes/scripts_TCGA_pancancer/2.run_iEDGE_pancancer.R
vignettes/tcga_sample_data/TCGA_PAAD.RDS
vignettes/tcga_sample_data/c2.cp.v5.0.symbols.gmt
vignettes/tcga_sample_data/c3.tft.v5.0.symbols.gmt
vignettes/tcga_sample_data/h.all.v5.0.symbols.gmt
vignettes/testrun/html/addboxplot.js
vignettes/testrun/html/addboxplotmodal.html
vignettes/testrun/html/addboxplotmodal.js
vignettes/testrun/html/addgenecard.js
vignettes/testrun/html/addlinks.js
vignettes/testrun/html/addlinksnobipartite.js
vignettes/testrun/html/bipartiteplots/cn1.html
vignettes/testrun/html/bipartiteplots/cn1.js
vignettes/testrun/html/bipartiteplots/cn2.html
vignettes/testrun/html/bipartiteplots/cn2.js
vignettes/testrun/html/boxheader1.html
vignettes/testrun/html/boxheader2.html
vignettes/testrun/html/boxplots/byalteration_cis_cn1_cis1.1.html
vignettes/testrun/html/boxplots/byalteration_cis_cn1_cis1.2.html
vignettes/testrun/html/boxplots/byalteration_cis_cn1_cis1.html
vignettes/testrun/html/boxplots/byalteration_cis_cn1_cis_1.1.html
vignettes/testrun/html/boxplots/byalteration_cis_cn1_cis_1.2.html
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vignettes/testrun/html/boxplots/byalteration_cis_cn2_cis2.1.html
vignettes/testrun/html/boxplots/byalteration_cis_cn2_cis2.2.html
vignettes/testrun/html/boxplots/byalteration_cis_cn2_cis2.html
vignettes/testrun/html/boxplots/byalteration_cis_cn2_cis_2.1.html
vignettes/testrun/html/boxplots/byalteration_cis_cn2_cis_2.2.html
vignettes/testrun/html/boxplots/byalteration_cis_cn2_cis_2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_cis2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_cis_2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_t.d.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_t.d.1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_t.d.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_t.m.cis1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_t.m.cis1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_t.m.cis1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d.1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d_1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d_1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d_1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d_2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d_2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.d_2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m.cis1.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m.cis1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m.cis1.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m.cis1.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m.cis1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m.cis1.3.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m.cis1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m_cis_1.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m_cis_1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m_cis_1.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m_cis_1.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m_cis_1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m_cis_1.3.html
vignettes/testrun/html/boxplots/byalteration_trans_cn1_trans.m_cis_1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_cis1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_cis1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_cis1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_cis_1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_cis_1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_cis_1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_others_1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_others_12.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_others_18.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_others_2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_others_20.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_others_30.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_others_8.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.d.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.d.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.d.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.3.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.4.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_t.m.cis2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d.1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d_1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d_2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d_2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.d_2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis1.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis1.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis1.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis1.3.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.1.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.3.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m.cis2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_1.1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_1.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_1.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_1.2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_1.3.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_2.2.1.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_2.2.html
vignettes/testrun/html/boxplots/byalteration_trans_cn2_trans.m_cis_2.html
vignettes/testrun/html/byalteration_cis_cn1.html
vignettes/testrun/html/byalteration_cis_cn2.html
vignettes/testrun/html/byalteration_trans_cn1.html
vignettes/testrun/html/byalteration_trans_cn2.html
vignettes/testrun/html/heatmap.css
vignettes/testrun/html/heatmap.js
vignettes/testrun/html/index.html
vignettes/testrun/html/indexlower.html
vignettes/testrun/html/indexupper.html
vignettes/testrun/html/template_bipartite.html
vignettes/testrun/pruning/js/cn1.js
vignettes/testrun/pruning/js/cn2.js
vignettes/testrun/pruning/tables/cis_summary.txt
vignettes/testrun/pruning/tables/pruned.all.txt
vignettes/testrun/pruning/tables/pruned.sig.txt
vignettes/testrun/tables/testrun_cis_full.txt
vignettes/testrun/tables/testrun_cis_sig_fdr_0.25.txt
vignettes/testrun/tables/testrun_trans_sig_fdr_0.05.txt
montilab/iEDGE documentation built on Sept. 7, 2019, 4:18 a.m.